bern02-ex1-workflows-fair

Assignment 1: Workflows and FAIR principles

This repository contains code from previous coursework, but organised and formatted in such a way as to adhere to the FAIR principles.

Installation

NOTE: This guide assumes you have a working installation of Python >= 3.12 and git on a unix-like (Linux, MacOS) system.

First, clone the repository:

git clone https://git.pimnel.com/pim/bern02-ex1-workflows-fair

You need to create a virtual environment to run the code in. To create a virtual environment and install the required packages, do the following:

cd bern02-ex1-workflows-fair
python3 -m venv .venv
source .venv/bin/activate
pip install -r requirements.txt

With the virtual environment still active, run

jupyter notebook

to start working with the notebook in your default browser.