From e3ce31330cfaf398d6a92ee644de94e83b664044 Mon Sep 17 00:00:00 2001 From: Pim Nelissen Date: Sun, 7 Sep 2025 17:35:51 +0200 Subject: [PATCH] add install instructions to README --- README.md | 31 ++++++++++++++++++++++++++++++- 1 file changed, 30 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index c8459ea..c547e87 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,32 @@ # bern02-ex1-workflows-fair -Assignment 1: Workflows and FAIR principles \ No newline at end of file +Assignment 1: Workflows and FAIR principles + +This repository contains code from previous coursework, but organised and formatted in such a way as to adhere to the FAIR principles. + +# Installation + +> NOTE: This guide assumes you have a working installation of Python 3 and git on a unix-like (Linux, MacOS) system. + +First, clone the repository: + +``` +git clone https://git.pimnel.com/pim/bern02-ex1-workflows-fair +``` + +You need to create a virtual environment to run the code in. To create a virtual environment and install the required packages, do the following: + +``` +cd bern02-ex1-workflows-fair +python3 -m venv .venv +source .venv/bin/activate +pip install -r requirements.txt +``` + +With the virtual environment still active, run + +``` +jupyter notebook +``` + +to start working with the notebook in your default browser. \ No newline at end of file